![]() ![]() Better tracking algorithms for cell and particle tracking for microscopy: my attempts in the direction are ( ) and (.Subpixel localization of small fluorescent particles in microscopy images.Interactive affine transform/deformation of images.Introduction of an adjustable spline in manual mask creation tool ( ).Making superresolution images with CAIR ( ).Bleach Correction for fluorescence microscopy (Mathematica's Histogram Transform can be extended) ( ).Making ImageAlign robust to work on Binary masks and stack of images where objects are moving.images to FFT and FFT to images is much easier in FIJI ( ).PIV for images (most researchers use: ).Scalebar and timestamp on images/videos ( ).Rolling ball Background subtraction and/or better algorithms for background subtraction.Multiview reconstruction to form 3D images from different cameras ( ).And feel free to add functionalities to the list.Ĭreating surface through a 3D image by minimizing cost ( ) Please let me know in the comments section if some function already exists. I sincerely hope that the image processing development team takes a note of the post. Furthermore, several of these functions have a role much broader than microscopy/fluorescence microscopy. As a biophysics student - who works with microscopy images and other images in general - I firmly believe that the suggested functions mentioned below can further add a lot of punch to the image processing core. In my opinion Mathematica's image processing core, albeit powerful and broad, can adopt a thing or two from FIJI. I never have to use any other program for image processing, save FIJI. I am thrilled by the image processing capabilities built into Mathematica and witness its power on a daily basis. Interpolate between two binary images in 2D and 3D Wolfram Neural Net repository nets can be made into special functions perhaps? Is the performance better than graph cut?įaster execution of Watershed components for 3D images for a considerable number of components.īuilt in functions (based on neural nets) that can be trained on datasets to do binary segmentation or semantic segmentation. ![]() Graph cut segmentation: the "GrowCutComponents" in Mathematica uses cellular automata. ![]()
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